Web applications

Web applications developed or maintenance by NBIS staff are listed below. See also the SciLifeLab Open Source website and the SciLifeLab Data Platform for other tools and applications developed at SciLifeLab.

TOPCONS

TOPCONS is a web-server for consensus prediction of membrane protein topology and signal peptides.

Metabolic Atlas

Metabolic Atlas integrates open source genome-scale metabolic models (GEMs) for easy browsing and analysis.

PRECOG

PRECOG is a tool developed to automate visualization, analysis and exploration of complex and highly resolved microbial growth data, as well as standardized extraction of the fitness components it contains.

Proteios

A multi-user platform for analysis and management of proteomics data.

SweFreq

Server hosting whole-genome variant frequencies for 1000 Swedish individuals generated within the SweGen project.

The Human Protein Atlas

Database with millions of high-resolution images. Expression and localization of proteins in a large variety of normal human tissues, cancer cells and cell lines with the aid of immunohistochemistry (IHC) images and immunofluorescence (IF) confocal microscopy images.

Xferticket

Service for facilitating transfer of big datasets to and from nbis experts.

PathBIX

PathBIX, Pathway Analysis with ANUBIX, is a web server using ANUBIX for network-based pathway enrichment analysis, identifying enriched pathways based on shared links with query gene sets.

GRNbenchmark

GRNbenchmark.org is a web server for benchmarking gene regulatory network inference methods.