systems biology, metabolism, omics integration, RNA-seq, scRNA-seq, metabolic modeling, kinetic modeling
Jonathan received a Ph.D. in Chemical & Biological Engineering from Princeton University under the supervision of Mark Brynildsen, where his research involved constructing and analyzing kinetic models of antimicrobial stress response in bacteria. After completing his Ph.D., Jonathan worked as a postdoctoral researcher with Jens Nielsen at Chalmers University of Technology. His postdoctoral work focused on the analysis of systems-level biological datasets (e.g., transcriptomics, proteomics, and other -omics) to gain a more mechanistic understanding of human disease, often involving integration with biological networks.
At the start of 2020, Jonathan joined NBIS as part of the bioinformatics long-term support team and the systems biology facility. His expertise includes metabolism, kinetic modeling, genome-scale metabolic modeling, bulk and single-cell transcriptome (RNA-Seq) analysis, and integrative omics analysis. Google Scholar profile