Head of Compute and Storage facility
storage, high-performance computing, cloud computing, e-infrastructure
Ola Spjuth has a PhD in Bioinformatics from Uppsala University, 2009 and did postdoctoral fellowships at Karolinska Institutet, Stockholm and Finnish Institute of Molecular Medicine (FIMM), Helsinki. Ola is employed as Senior Lecturer at Department of Pharmaceutical Biosciences and his research group has focus on how modern e-infrastructures enables data-intensive and translational bioinformatics, with applications in pharmaceutical bioinformatics.
Ola is heading the Bioinformatics Compute and Storage facility at NBIS and Science for Life Laboratory and is also deputy director at the UPPMAX high performance computing center at Uppsala University. He is located at SciLifeLab Uppsala.
Spjuth, O., Bongcam-Rudloff, E., Dahlberg, J., Dahlö, M., Kallio, A., Pireddu, L., Vezzi, F., and Korpelainen, E. (2016) Recommendations on e-infrastructures for next-generation sequencing. Gigascience
Spjuth, O. et al.
(2016) Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research. Eur J Hum Genet
Alvarsson, J., Lampa, S., Schaal, W., Andersson, C., Wikberg, J. E. S., and Spjuth, O. (2016) Large-scale ligand-based predictive modelling using support vector machines. J Cheminform
Spjuth, O., Rydberg, P., Willighagen, E. L., Evelo, C. T., and Jeliazkova, N. (2016) XMetDB: an open access database for xenobiotic metabolism. J Cheminform
Moghadam, B. T., Alvarsson, J., Holm, M., Eklund, M., Carlsson, L., and Spjuth, O. (2015) Scaling predictive modeling in drug development with cloud computing. J Chem Inf Model
Siretskiy, A., Sundqvist, T., Voznesenskiy, M., and Spjuth, O. (2015) A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data. Gigascience
Spjuth, O., Bongcam-Rudloff, E., Hernández, G. C., Forer, L., Giovacchini, M., Guimera, R. V., Kallio, A., Korpelainen, E., Kańduła, M. M., Krachunov, M., Kreil, D. P., Kulev, O., Łabaj, P. P., Lampa, S., Pireddu, L., Schönherr, S., Siretskiy, A., and Vassilev, D. (2015) Experiences with workflows for automating data-intensive bioinformatics. Biol Direct
Dahlö, M., Haziza, F., Kallio, A., Korpelainen, E., Bongcam-Rudloff, E., and Spjuth, O. (2015) BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences. Bioinform Biol Insights
Lampa, S., Dahlö, M., Olason, P. I., Hagberg, J., and Spjuth, O. (2013) Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data. Gigascience
Spjuth, O., Helmus, T., Willighagen, E. L., Kuhn, S., Eklund, M., Wagener, J., Murray-Rust, P., Steinbeck, C., and Wikberg, J. E. S. (2007) Bioclipse: an open source workbench for chemo- and bioinformatics. BMC Bioinformatics